The port of Mykonos is connected daily with Piraeus and Rafina. The routes are operated by modern and comfortable passenger-vehicle ferries. At the same time, it is also connected to the rest of the Cyclades.

Mykonos has 2 ports, the Old Port and the New Port. Both are located near Chora, at a distance of 1.5 km from each other. Most of the routes from Piraeus, Rafina and Cyclades are served from the New Port in Tourlos, 3 km outside Chora. In the Old Port, which is closer to Chora, smaller boats are usually moored.

However, depending on weather conditions and sea traffic, a ship's port of arrival/departure may change at the last minute.

In the summer months, the port of Mykonos is connected by frequent sailings to many nearby islands.